dmc.non.parametric: Perform non-parametrix wilcoxon test

In TCGAbiolinks: TCGAbiolinks: An R/Bioconductor package for integrative analysis with GDC data

Description

Perform non-parametrix wilcoxon test

Usage

dmc.non.parametric(
  matrix,
  idx1 = NULL,
  idx2 = NULL,
  paired = FALSE,
  adj.method = "BH",
  alternative = "two.sided",
  cores = 1
)

Arguments

matrix	A matrix
idx1	Index columns group1
idx2	Index columns group2
paired	Do a paired wilcoxon test? Default: True
adj.method	P-value adjustment method. Default:"BH" Benjamini-Hochberg
alternative	wilcoxon test alternative
cores	Number of cores to be used

Value

Data frame with p-values and diff mean

Examples

 nrows <- 200; ncols <- 20
 counts <- matrix(
   runif(nrows * ncols, 1, 1e4), nrows,
   dimnames = list(paste0("cg",1:200),paste0("S",1:20))
 )
 TCGAbiolinks:::dmc.non.parametric(counts,1:10,11:20)

TCGAbiolinks documentation built on Nov. 8, 2020, 5:37 p.m.