getManifest: Get a Manifest from GDCquery output that can be used with...
In TCGAbiolinks: TCGAbiolinks: An R/Bioconductor package for integrative analysis with GDC data
Description
Usage
Arguments
Examples
Description
Get a Manifest from GDCquery output that can be used with GDC-client
Usage
1
getManifest(query, save = FALSE)
Arguments
query
A query for GDCquery function
save
Write Manifest to a txt file (tab separated)
Examples
1
2
3
4
5
6
query <- GDCquery(project = "TARGET-AML",
data.category = "Transcriptome Profiling",
data.type = "Gene Expression Quantification",
workflow.type = "HTSeq - Counts",
barcode = c("TARGET-20-PADZCG-04A-01R","TARGET-20-PARJCR-09A-01R"))
getManifest(query)
TCGAbiolinks documentation built on Nov. 8, 2020, 5:37 p.m.
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Description Usage Arguments Examples
Description
Get a Manifest from GDCquery output that can be used with GDC-client
Usage
1 | getManifest(query, save = FALSE)
|
Arguments
query |
A query for GDCquery function |
save |
Write Manifest to a txt file (tab separated) |
Examples
1 2 3 4 5 6 | query <- GDCquery(project = "TARGET-AML",
data.category = "Transcriptome Profiling",
data.type = "Gene Expression Quantification",
workflow.type = "HTSeq - Counts",
barcode = c("TARGET-20-PADZCG-04A-01R","TARGET-20-PARJCR-09A-01R"))
getManifest(query)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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