getSampleFilesSummary: Retrieve summary of files per sample in a project
In TCGAbiolinks: TCGAbiolinks: An R/Bioconductor package for integrative analysis with GDC data
Description
Usage
Arguments
Value
Examples
Description
Retrieve the numner of files under each
data_category + data_type + experimental_strategy + platform
Almost like https://portal.gdc.cancer.gov/exploration
Usage
1
getSampleFilesSummary(project, legacy = FALSE, files.access = NA)
Arguments
project
A GDC project
legacy
Access legacy database ? Deafult: FALSE
files.access
Filter by file access ("open" or "controlled").
Default: no filter
Value
A data frame with the maf file information
Examples
1
2
3
4
5
summary <- getSampleFilesSummary("TCGA-UCS")
## Not run:
summary <- getSampleFilesSummary(c("TCGA-OV","TCGA-ACC"))
## End(Not run)
TCGAbiolinks documentation built on Nov. 8, 2020, 5:37 p.m.
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Description Usage Arguments Value Examples
Description
Retrieve the numner of files under each data_category + data_type + experimental_strategy + platform Almost like https://portal.gdc.cancer.gov/exploration
Usage
1 | getSampleFilesSummary(project, legacy = FALSE, files.access = NA)
|
Arguments
project |
A GDC project |
legacy |
Access legacy database ? Deafult: FALSE |
files.access |
Filter by file access ("open" or "controlled"). Default: no filter |
Value
A data frame with the maf file information
Examples
1 2 3 4 5 | summary <- getSampleFilesSummary("TCGA-UCS")
## Not run:
summary <- getSampleFilesSummary(c("TCGA-OV","TCGA-ACC"))
## End(Not run)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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