getResults: Get the results table from query

In TCGAbiolinks: TCGAbiolinks: An R/Bioconductor package for integrative analysis with GDC data

Description

Get the results table from query, it can select columns with cols argument and return a number of rows using rows argument.

Usage

getResults(query, rows, cols)

Arguments

query	A object from GDCquery
rows	Rows identifiers (row numbers)
cols	Columns identifiers (col names)

Value

Table with query results

Examples

query <- GDCquery(project = "TCGA-GBM",
                  data.category = "Transcriptome Profiling",
                  data.type = "Gene Expression Quantification",
                  workflow.type = "HTSeq - Counts",
                  barcode = c("TCGA-14-0736-02A-01R-2005-01", "TCGA-06-0211-02A-02R-2005-01"))
results <- getResults(query)

TCGAbiolinks documentation built on Nov. 8, 2020, 5:37 p.m.