matchedMetExp: Get GDC samples with both DNA methylation (HM450K) and Gene...
In TCGAbiolinks: TCGAbiolinks: An R/Bioconductor package for integrative analysis with GDC data
Description
Usage
Arguments
Value
Examples
Description
For a given TCGA project it gets the samples (barcode) with both DNA methylation and Gene expression data
from GDC database
Usage
1
matchedMetExp(project, legacy = FALSE, n = NULL)
Arguments
project
A GDC project
legacy
Access legacy (hg19) or harmonized database (hg38).
n
Number of samples to return. If NULL return all (default)
Value
A vector of barcodes
Examples
1
2
# Get ACC samples with both DNA methylation (HM450K) and gene expression aligned to hg19
samples <- matchedMetExp("TCGA-UCS", legacy = TRUE)
TCGAbiolinks documentation built on Nov. 8, 2020, 5:37 p.m.
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Description Usage Arguments Value Examples
Description
For a given TCGA project it gets the samples (barcode) with both DNA methylation and Gene expression data from GDC database
Usage
1 | matchedMetExp(project, legacy = FALSE, n = NULL)
|
Arguments
project |
A GDC project |
legacy |
Access legacy (hg19) or harmonized database (hg38). |
n |
Number of samples to return. If NULL return all (default) |
Value
A vector of barcodes
Examples
1 2 | # Get ACC samples with both DNA methylation (HM450K) and gene expression aligned to hg19
samples <- matchedMetExp("TCGA-UCS", legacy = TRUE)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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