ucl-medical-genomics/ChAMP: Chip Analysis Methylation Pipeline for Illumina HumanMethylation450 and EPIC

The package includes quality control metrics, a selection of normalization methods and novel methods to identify differentially methylated regions and to highlight copy number alterations.

Getting started

Package details

AuthorYuan Tian [cre,aut], Tiffany Morris [ctb], Lee Stirling [ctb], Andrew Feber [ctb], Andrew Teschendorff [ctb], Ankur Chakravarthy [ctb]
Bioconductor views CopyNumber DNAMethylation MethylationArray Microarray Normalization TwoChannel
MaintainerYuan Tian <champ450k@gmail.com>
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
ucl-medical-genomics/ChAMP documentation built on June 26, 2019, 12:11 a.m.