rcavalcante/DMRcate: Methylation array and sequencing spatial analysis methods

De novo identification and extraction of differentially methylated regions (DMRs) from the human genome using Whole Genome Bisulphite Sequencing (WGBS) and Illumina Infinium Array (450K and EPIC) data. Provides functionality for filtering probes possibly confounded by SNPs and cross-hybridisation. Includes GRanges generation and plotting functions.

Getting started

Package details

AuthorTim Peters
Bioconductor views DNAMethylation DifferentialExpression DifferentialMethylation GeneExpression Genetics GenomeAnnotation MethylationArray Microarray MultipleComparison OneChannel QualityControl TimeCourse TwoChannel
MaintainerTim Peters <t.peters@garvan.org.au>
Licensefile LICENSE
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
rcavalcante/DMRcate documentation built on May 21, 2019, 10:13 a.m.