bbmri-nl/MethylAid: Visual and interactive quality control of large Illumina DNA Methylation array data sets

A visual and interactive web application using RStudio's shiny package. Bad quality samples are detected using sample-dependent and sample-independent controls present on the array and user adjustable thresholds. In depth exploration of bad quality samples can be performed using several interactive diagnostic plots of the quality control probes present on the array. Furthermore, the impact of any batch effect provided by the user can be explored.

Getting started

Package details

AuthorMaarten van Iterson [aut, cre], Elmar Tobi[ctb], Roderick Slieker[ctb], Wouter den Hollander[ctb], Rene Luijk[ctb] and Bas Heijmans[ctb]
Bioconductor views BatchEffect DNAMethylation GUI MethylationArray Microarray QualityControl TwoChannel Visualization
MaintainerM. van Iterson <[email protected]>
LicenseGPL (>= 2)
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
bbmri-nl/MethylAid documentation built on May 31, 2019, 5:10 p.m.