Biocview "BatchEffect"

Adjust for positional and batch effects using ComBat
Adjust for positional and batch effects using ComBat
alpine
alpine
alpine
Assess Differential Gene Expression Experiments with ERCC Controls
Assess Differential Gene Expression Experiments with ERCC Controls
Assess Differential Gene Expression Experiments with ERCC Controls
Assess Differential Gene Expression Experiments with ERCC Controls
Batch Effects Quality Control Software
Batch Effects Quality Control Software
Controlling bias and inflation in association studies using the empirical null distribution
Controlling bias and inflation in association studies using the empirical null distribution
Correct for batch effects in DNA methylation data
Correct for batch effects in DNA methylation data
Cross Platform Meta-Analysis of Microarray Data
Cross Platform Meta-Analysis of Microarray Data
Cross Platform Meta-Analysis of Microarray Data
Data preprocessing and quality control for Illumina HumanMethylation450 and MethylationEPIC BeadChip
Data preprocessing and quality control for Illumina HumanMethylation450 and MethylationEPIC BeadChip
Data preprocessing and quality control for Illumina HumanMethylation450 and MethylationEPIC BeadChip
Detecting hidden batch factors through data adaptive adjustment for biological effects
Detecting hidden batch factors through data adaptive adjustment for biological effects
Empirical Analysis of Digital Gene Expression Data in R
Empirical Analysis of Digital Gene Expression Data in R
Fast Methylome-Wide Association Study Pipeline for Enrichment Platforms
Fast Methylome-Wide Association Study Pipeline for Enrichment Platforms
Fast Methylome-Wide Association Study Pipeline for Enrichment Platforms
GC Aware Peak Caller
GC Aware Peak Caller
GC Aware Peak Caller
Generally applicable transcriptome-wide analysis of translational efficiency using anota2seq
GUI for limma package with Affymetrix microarrays
GUI for limma package with Affymetrix microarrays
GUI for limma package with two color microarrays
GUI for limma package with two color microarrays
Iteratively Adjusted Surrogate Variable Analysis
k-nearest neighbour batch effect test
Linear model and normality based transformation method (Linnorm)
Linear model and normality based transformation method (Linnorm)
Linear Models for Microarray Data
Linear Models for Microarray Data
MetCleaning
Methods for Single-Cell RNA-Seq Data Analysis
Methods for Single-Cell RNA-Seq Data Analysis
Methods for Single-Cell RNA-Seq Data Analysis
Microarray Analysis of Differential Expression
peakAnnotation
Principal Variance Component Analysis (PVCA)
Principal Variance Component Analysis (PVCA)
QA/QC of a gVCF or VCF file
QA/QC of a gVCF or VCF file
Rcpp Integration Surrogate Variable Analysis
RnBeads
RnBeads
showTags2
Statistics and dIagnostic Graphs for HTS
Statistics and dIagnostic Graphs for HTS
Surrogate Variable Analysis
Surrogate Variable Analysis
Surrogate Variable Analysis
SVAPLSseq-An R package to adjust for the hidden factors of variability in differential gene expression studies based on RNAseq data
SVAPLSseq-An R package to estimate the hidden factors of unwanted variability and adjust for them to enable a more powerful and accurate differential expression analysis based on RNAseq data
The removal of batch effects from datasets using a PCA and constrained optimisation based technique
The removal of batch effects from datasets using a PCA and constrained optimisation based technique
The removal of batch effects from datasets using a PCA and constrained optimisation based technique
Visual and interactive quality control of large Illumina DNA Methylation array data sets
Visual and interactive quality control of large Illumina DNA Methylation array data sets