statTarget: Statistical Analysis of Metabolite Profile
Version 1.6.0

An easy to use tool provides a graphical user interface for quality control based shift signal correction, integration of metabolomic data from multi-batch experiments, and the comprehensive statistic analysis in non-targeted or targeted metabolomics.

Browse man pages Browse package API and functions Browse package files

AuthorHemi Luan
Bioconductor views GUI MassSpectrometry Metabolomics QualityControl Regression
Date of publicationNone
MaintainerHemi Luan <hemi.luan@gmail.com>
LicenseGPL (>= 2)
Version1.6.0
URL https://github.com/13479776/statTarget
Package repositoryView on Bioconductor
InstallationInstall the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("statTarget")

Man pages

shiftCor: shiftCor for GUI
statAnalysis: statAnalysis for GUI
statTargetGUI: statTargetGUI for GUI
statTarget-package: Statistical Analysis of Metabolite Profile
transCode: transCode for statTarget inputs
transX: transX for statTarget inputs

Functions

ExcName Source code
Plot_pca_loading Source code
Plot_pca_score_stat Source code
Plot_plsda_stat Source code
RSDdist Source code
RandomF Source code
RsdCal Source code
aucROC Source code
bStat Source code
bStatCor Source code
bStatX Source code
boxPlot Source code
chose_driver Source code
col_pvalues Source code
cov_trob_sT Source code
dataEllipse_sT Source code
ellipse_sT Source code
explore_data_stat Source code
flipdim_sT Source code
glog Source code
loessGCV Source code
loplot Source code
missvalue Source code
oddRatio Source code
onAttach Source code
outlier_stat Source code
permut Source code
plsda_stat Source code
pvalues Source code
rule80 Source code
sT_univariate Source code
shapiro Source code
shiftCor Man page Source code
showLabels1 Source code
showLabels_sT Source code
statAnalysis Man page Source code
statTarget Man page Source code
statTarget-package Man page
statTargetGUI Man page Source code
transCode Man page Source code
transX Man page Source code
volcano Source code
welch Source code
wmw Source code
work_dir Source code

Files

DESCRIPTION
NAMESPACE
R
R/ExcName.R
R/Plot_pca_loading.R
R/Plot_pca_score_stat.R
R/Plot_plsda_stat.R
R/RSDdist.R
R/RandomF.R
R/RsdCal.R
R/aucROC.R
R/bStat.R
R/bStatCor.R
R/bStatX.R
R/boxPlot.R
R/chose_driver.R
R/col_pvalues.R
R/cov_trob_sT.R
R/dataEllipse_sT.R
R/ellipse_sT.R
R/explore_data_stat.R
R/flipdim_sT.R
R/glog.R
R/loplot_v1.R
R/missvalue.R
R/oddRatio.R
R/outlier_stat.R
R/permut.R
R/plsda_stat.R
R/pvalues.R
R/rule80.R
R/sT_univariate.R
R/shapiro.R
R/shiftCor_v2.R
R/showLables_sT.R
R/spanCV.R
R/statAnalysis.R
R/statTarget-package.R
R/statTargetGUI.R
R/transX.R
R/volcano.R
R/welch.R
R/wmw.R
R/work_dir.R
R/zzz.R
README.md
build
build/vignette.rds
inst
inst/NEWS
inst/doc
inst/doc/statTarget.R
inst/doc/statTarget.Rmd
inst/doc/statTarget.html
inst/extdata
inst/extdata/MTBLS79.csv
inst/extdata/MTBLS79_sampleList.csv
inst/extdata/data_example.csv
inst/extdata/shinv.png
inst/extdata/xcmsOutput.tsv
man
man/shiftCor.Rd
man/statAnalysis.Rd
man/statTarget-package.Rd
man/statTargetGUI.Rd
man/transCode.Rd
man/transX.Rd
tests
tests/testthat.R
vignettes
vignettes/statTarget.Rmd
statTarget documentation built on May 20, 2017, 10:53 p.m.