pathway analysis (mummichog)

knitr::opts_chunk$set(collapse = TRUE, comment = "#>")

statTarget result for pathway analysis using mummichog approach.

Pathways analysis by using MS peaks with accurate mass

  1. to get the p.value from the file in /statTarget/statAnalysis/Univariate/Pvalues

  2. to get the fold.change from the file in /statTarget/statAnalysis/Univariate/Fold_Changes

  3. to get the m.z from the .tsv file from the xcms output.

  4. to use the EXCEL for generation the ".txt" format with column named m.z, p.value and t.score (fold.change value)

submit the table to MS to pathway analysis panel in metaboanalyst web:

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statTarget documentation built on Nov. 8, 2020, 8:27 p.m.