variancePartition: Quantify and interpret divers of variation in multilevel gene expression experiments

Quantify and interpret multiple sources of biological and technical variation in gene expression experiments. Uses linear mixed model to quantify variation in gene expression attributable to individual, tissue, time point, or technical variables.

AuthorGabriel E. Hoffman
Date of publicationNone
MaintainerGabriel E. Hoffman <gabriel.hoffman@mssm.edu>
LicenseGPL (>= 2)
Version1.4.1

View on Bioconductor

Files in this package

variancePartition/DESCRIPTION
variancePartition/NAMESPACE
variancePartition/NEWS
variancePartition/R
variancePartition/R/ESS.R variancePartition/R/calcVarPart.R variancePartition/R/canCorPairs.R variancePartition/R/checkModelStatus.R variancePartition/R/confidenceIntervals.R variancePartition/R/extractVarPart.R variancePartition/R/fitModels.R variancePartition/R/fitVarTest.R variancePartition/R/heatmap.R variancePartition/R/misc.R variancePartition/R/plotCorrMatrix.R variancePartition/R/plotCorrStructure.R variancePartition/R/plotStratifyBy.R variancePartition/R/plots.R variancePartition/R/sortCols.R
variancePartition/TODO
variancePartition/build
variancePartition/build/vignette.rds
variancePartition/data
variancePartition/data/varPartData.rda
variancePartition/inst
variancePartition/inst/CITATION
variancePartition/inst/doc
variancePartition/inst/doc/additional_visualization.R
variancePartition/inst/doc/additional_visualization.Rnw
variancePartition/inst/doc/additional_visualization.pdf
variancePartition/inst/doc/variancePartition.R
variancePartition/inst/doc/variancePartition.Rnw
variancePartition/inst/doc/variancePartition.pdf
variancePartition/man
variancePartition/man/ESS-method.Rd variancePartition/man/as.matrix-varPartResults-method.Rd variancePartition/man/calcVarPart-method.Rd variancePartition/man/canCorPairs.Rd variancePartition/man/colinearityScore.Rd variancePartition/man/extractVarPart.Rd variancePartition/man/fitExtractVarPartModel-method.Rd variancePartition/man/fitVarPartModel-method.Rd variancePartition/man/getVarianceComponents.Rd variancePartition/man/ggColorHue.Rd variancePartition/man/plotCorrMatrix.Rd variancePartition/man/plotCorrStructure.Rd variancePartition/man/plotPercentBars.Rd variancePartition/man/plotStratify.Rd variancePartition/man/plotStratifyBy.Rd variancePartition/man/plotVarPart-method.Rd variancePartition/man/residuals-VarParFitList-method.Rd variancePartition/man/sortCols-method.Rd variancePartition/man/varPartConfInf.Rd variancePartition/man/varPartData.Rd
variancePartition/vignettes
variancePartition/vignettes/additional_visualization.Rnw
variancePartition/vignettes/library.bib
variancePartition/vignettes/variancePartition.Rnw

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