Files in variancePartition
Quantify and interpret divers of variation in multilevel gene expression experiments
TODO
README.md
NEWS
NAMESPACE
DESCRIPTION
build/vignette.rds
data/datalist
data/varPartDEdata.rda
data/varPartData.rda
R/FMT.R
R/ESS.R
R/plotStratifyBy.R
R/misc.R
R/plotCorrStructure.R
R/sortCols.R
R/voomWithDreamWeights.R
R/checkModelStatus.R
R/get_prediction.R
R/fitModels.R
R/plotContrasts.R
R/heatmap.R
R/calcVarPart.R
R/canCorPairs.R
R/fitMixedModelDE.R
R/toptable.R
R/plots.R
R/eBayesFMT.R
R/data_annotation.R
R/confidenceIntervals.R
R/plotCorrMatrix.R
R/extractVarPart.R
vignettes/FAQ.Rmd
vignettes/dream.Rmd
vignettes/library.bib
vignettes/additional_visualization.Rmd
vignettes/variancePartition.Rnw
vignettes/theory_practice_random_effects.Rnw
man/colinearityScore.Rd
man/varPartData.Rd
man/ggColorHue.Rd
man/voomWithDreamWeights.Rd
man/varParFrac-class.Rd
man/fitExtractVarPartModel-method.Rd
man/get_prediction-method.Rd
man/MArrayLM2-class.Rd
man/toptable-method.Rd
man/as.matrix-varPartResults-method.Rd
man/eBayesFMT.Rd
man/plotStratifyBy.Rd
man/plotCorrStructure.Rd
man/VarParFitList-class.Rd
man/plotCompareP-method.Rd
man/fitVarPartModel-method.Rd
man/sortCols-method.Rd
man/eBayes-method.Rd
man/plotVarPart-method.Rd
man/varPartDEdata.Rd
man/residuals-MArrayLM2-method.Rd
man/classifyTestsF-MArrayLM2-method.Rd
man/plotCorrMatrix.Rd
man/classifyTestsF.Rd
man/as.data.frame-varPartResults-method.Rd
man/plotPercentBars.Rd
man/calcVarPart-method.Rd
man/dot-isMixedModelFormula.Rd
man/FMT-class.Rd
man/canCorPairs.Rd
man/FMT.ZI.Rd
man/VarParCIList-class.Rd
man/extractVarPart.Rd
man/FMT.Rd
man/residuals-VarParFitList-method.Rd
man/dream-method.Rd
man/subset.MArrayLM2-method.Rd
man/dot-getAllUniContrasts.Rd
man/ESS-method.Rd
man/residuals-MArrayLM-method.Rd
man/getContrast-method.Rd
man/varPartConfInf.Rd
man/dot-standard_transform.Rd
man/plotStratify.Rd
man/plotContrasts.Rd
man/varPartResults-class.Rd
tests/runTests.R
inst/CITATION
inst/doc/FAQ.Rmd
inst/doc/dream.Rmd
inst/doc/theory_practice_random_effects.R
inst/doc/dream.html
inst/doc/additional_visualization.Rmd
inst/doc/theory_practice_random_effects.pdf
inst/doc/additional_visualization.html
inst/doc/additional_visualization.R
inst/doc/FAQ.R
inst/doc/dream.R
inst/doc/variancePartition.R
inst/doc/variancePartition.Rnw
inst/doc/FAQ.html
inst/doc/variancePartition.pdf
inst/doc/theory_practice_random_effects.Rnw
inst/unitTests/test_dream_bplapply.R
inst/unitTests/test_voomWithDreamWeights.R
inst/unitTests/test_residuals.R
inst/unitTests/test_combined_contrasts.R
inst/unitTests/test_sparseMatrix.R
