FMT: Fully moderated t-test

Description Usage Arguments

View source: R/FMT.R

Description

Fully moderated t-test

Usage

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FMT(
  Amean,
  sigmasq,
  df,
  span1 = 0.5,
  span2 = 0.95,
  iter1 = 4,
  iter2 = 4,
  b = 20
)

Arguments

Amean

average log intensity levels of all genes

sigmasq

residual variances of all genes

df

degrees of freedom for sigmasq

span1

span parameter in LOESS smoothing function

span2

span parameter in LOESS smoothing function

iter1

iteration number in LOESS smoothing function

iter2

iteration number in LOESS smoothing function

b

number of genes on either side of moving average window when calculating variance of log residual variances


variancePartition documentation built on Nov. 8, 2020, 5:18 p.m.