FMT: Fully moderated t-test

In variancePartition: Quantify and interpret divers of variation in multilevel gene expression experiments

Description

Fully moderated t-test

Usage

FMT(
  Amean,
  sigmasq,
  df,
  span1 = 0.5,
  span2 = 0.95,
  iter1 = 4,
  iter2 = 4,
  b = 20
)

Arguments

Amean	average log intensity levels of all genes
sigmasq	residual variances of all genes
df	degrees of freedom for sigmasq
span1	span parameter in LOESS smoothing function
span2	span parameter in LOESS smoothing function
iter1	iteration number in LOESS smoothing function
iter2	iteration number in LOESS smoothing function
b	number of genes on either side of moving average window when calculating variance of log residual variances

variancePartition documentation built on Nov. 8, 2020, 5:18 p.m.