plotCorrMatrix: plotCorrMatrix

In variancePartition: Quantify and interpret divers of variation in multilevel gene expression experiments

Description

Plot correlation matrix

Usage

plotCorrMatrix(
  C,
  dendrogram = "both",
  sort = TRUE,
  margins = c(13, 13),
  key.xlab = "correlation",
  ...
)

Arguments

C	correlation matrix: R or R^2 matrix
dendrogram	character string indicating whether to draw 'both' or none'
sort	sort rows and columns based on clustering
margins	spacing of plot
key.xlab	label of color gradient
...	additional arguments to heatmap.2

Details

Plots image of correlation matrix using customized call to heatmap.2

Value

Image of correlation matrix

Examples

# simulate simple matrix of 10 variables
mat = matrix(rnorm(1000), ncol=10)

# compute correlation matrix
C = cor(mat)

# plot correlations
plotCorrMatrix( C )

# plot squared correlations
plotCorrMatrix( C^2, dendrogram="none" )

variancePartition documentation built on Nov. 8, 2020, 5:18 p.m.