toptable-method: toptable for definition

In variancePartition: Quantify and interpret divers of variation in multilevel gene expression experiments

Description

toptable for definition

toptable for FMT

toptable for MArrayLM2

Usage

topTable(
  fit,
  coef = NULL,
  number = 10,
  genelist = fit$genes,
  adjust.method = "BH",
  sort.by = "B",
  resort.by = NULL,
  p.value = 1,
  lfc = 0,
  confint = FALSE
)

## S4 method for signature 'FMT'
topTable(
  fit,
  coef = NULL,
  number = 10,
  genelist = fit$genes,
  adjust.method = "BH",
  sort.by = "p",
  resort.by = NULL,
  p.value = 1,
  lfc = 0,
  confint = FALSE
)

## S4 method for signature 'MArrayLM2'
topTable(
  fit,
  coef = NULL,
  number = 10,
  genelist = fit$genes,
  adjust.method = "BH",
  sort.by = "p",
  resort.by = NULL,
  p.value = 1,
  lfc = 0,
  confint = FALSE
)

Arguments

fit	fit
coef	coef
number	number
genelist	genelist
adjust.method	adjust.method
sort.by	sort.by
resort.by	resort.by
p.value	p.value
lfc	lfc
confint	confint

Value

results of toptable

results of toptable

results of toptable

variancePartition documentation built on Nov. 8, 2020, 5:18 p.m.