README.md

In variancePartition: Quantify and interpret divers of variation in multilevel gene expression experiments

variancePartition

Manuscript describing dream for differential expression in Bioinformatics

Manuscript describing the variancePartition package in BMC Bioinformatics

Install from GitHub

library(devtools)

install_github("GabrielHoffman/variancePartition")

Notes

This is a developmental version. For stable release see Bioconductor version.

For questions about specifying contrasts with dream, see examples here.

See frequently asked questions.

See repo of examples from the paper.

Reporting bugs

Please help speed up bug fixes by providing a 'minimal reproducible example' that starts with a new R session. I recommend the reprex package to produce a GitHub-ready example that is reproducable from a fresh R session.

variancePartition documentation built on Nov. 8, 2020, 5:18 p.m.