dot-getAllUniContrasts: Get all univariate contrasts

In variancePartition: Quantify and interpret divers of variation in multilevel gene expression experiments

Description

Get all univariate contrasts

Usage

.getAllUniContrasts(exprObj, formula, data)

Arguments

exprObj	matrix of expression data (g genes x n samples), or ExpressionSet, or EList returned by voom() from the limma package
formula	specifies variables for the linear (mixed) model. Must only specify covariates, since the rows of exprObj are automatically used a a response. e.g.: ~ a + b + (1|c) Formulas with only fixed effects also work
data	data.frame with columns corresponding to formula

Value

Matrix testing each variable one at a time. Contrasts are on rows

variancePartition documentation built on Nov. 8, 2020, 5:18 p.m.