API for variancePartition
Quantify and interpret divers of variation in multilevel gene expression experiments

Global functions
.change_t_df Source code
.eval_lmm Source code
.fitExtractVarPartModel Source code
.fitVarPartModel Source code
.getAllUniContrasts Man page Source code
.getContrastInit Source code
.get_pids Source code
.isDisconnected Source code
.isMixedModelFormula Man page Source code
.plotVarPart Source code
.sortCols Source code
.standard_transform Man page Source code
.standardized_t_stat Source code
.topTableT Source code
ESS Man page
ESS,lmerMod-method Man page
MArrayLM2-class Man page
VarParCIList-class Man page
VarParFitList-class Man page
[.MArrayLM2 Man page
as.data.frame Man page
as.data.frame,varPartResults-method Man page
as.matrix Man page
as.matrix,varPartResults-method Man page
calcVarPart Man page
calcVarPart,lm-method Man page
calcVarPart,lmerMod-method Man page
canCorPairs Man page Source code
classifyTestsF Man page
classifyTestsF,MArrayLM2-method Man page
colinearityScore Man page Source code
countMatrix Man page
dream Man page Source code
eBayes,MArrayLM2-method Man page
exprIter Source code
extractVarPart Man page Source code
fitExtractVarPartModel Man page
fitExtractVarPartModel,EList-method Man page
fitExtractVarPartModel,ExpressionSet-method Man page
fitExtractVarPartModel,data.frame-method Man page
fitExtractVarPartModel,matrix-method Man page
fitVarPartModel Man page
fitVarPartModel,EList-method Man page
fitVarPartModel,ExpressionSet-method Man page
fitVarPartModel,data.frame-method Man page
fitVarPartModel,matrix-method Man page
geneCounts Man page
geneExpr Man page
getAdjustVariables Source code
getContrast Man page Source code
getVarianceComponents Man page Source code
get_denom Source code
ggColorHue Man page Source code
heatmap.3 Source code
info Man page
isMultipleVaryingCoefficientTerms Source code
isVaryingCoefficientModel Source code
iterBatch Source code
metadata Man page
plotCompareP Man page Source code
plotContrasts Man page Source code
plotCorrMatrix Man page Source code
plotCorrStructure Man page Source code
plotPercentBars Man page Source code
plotStratify Man page Source code
plotStratifyBy Man page Source code
plotVarPart Man page
plotVarPart,data.frame-method Man page
plotVarPart,matrix-method Man page
plotVarPart,varPartResults-method Man page
residuals Man page
residuals,VarParFitList-method Man page
sortCols Man page
sortCols,data.frame-method Man page
sortCols,matrix-method Man page
sortCols,varPartResults-method Man page
subset.MArrayLM2,MArrayLM2-method Man page
topTable,MArrayLM2-method Man page
toptable,MArrayLM2-method Man page
varParFrac-class Man page
varPartConfInf Man page Source code
varPartDEdata Man page
varPartData Man page
varPartResults-class Man page
voomWithDreamWeights Man page Source code
variancePartition documentation built on Oct. 31, 2019, 3:19 a.m.