as.data.frame-varPartResults-method: Convert to data.frame

In variancePartition: Quantify and interpret divers of variation in multilevel gene expression experiments

Description

Convert varPartResults to data.frame

Usage

## S4 method for signature 'varPartResults'
as.data.frame(x, row.names = NULL, optional = FALSE, ...)

Arguments

x	varPartResults
row.names	pass thru to generic
optional	pass thru to generic
...	other arguments.

Value

data.frame

Examples

# load library
# library(variancePartition)

# load simulated data:
# geneExpr: matrix of gene expression values
# info: information/metadata about each sample
data(varPartData)

# Specify variables to consider
# Age is continuous so we model it as a fixed effect
# Individual and Tissue are both categorical, so we model them as random effects
form <- ~ Age + (1|Individual) + (1|Tissue) 

# Fit model
varPart <- fitExtractVarPartModel( geneExpr[1:5,], form, info )

# convert to matrix
as.data.frame(varPart)

variancePartition documentation built on Nov. 8, 2020, 5:18 p.m.