fishpond: Fishpond: differential transcript and gene expression with inferential replicates

Fishpond contains methods for differential transcript and gene expression analysis of RNA-seq data using inferential replicates for uncertainty of abundance quantification, as generated by Gibbs sampling or bootstrap sampling. Also the package contains utilities for working with Salmon and Alevin quantification files.

Package details

AuthorAnzi Zhu [aut, ctb], Michael Love [aut, cre], Avi Srivastava [aut, ctb], Rob Patro [aut, ctb], Joseph Ibrahim [aut, ctb], Hirak Sarkar [ctb], Scott Van Buren [ctb]
Bioconductor views AlternativeSplicing BatchEffect DifferentialExpression DifferentialSplicing GeneExpression MultipleComparison Normalization RNASeq Regression Sequencing SingleCell Transcription Visualization
MaintainerMichael Love <>
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:
if (!requireNamespace("BiocManager", quietly = TRUE))


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fishpond documentation built on Nov. 8, 2020, 7:54 p.m.