API for fishpond
Fishpond: differential transcript and gene expression with inferential replicates
| Global functions | |
|---|---|
| addStatsFromCSV | Man page Source code |
| boxplot2 | Source code |
| computeInfRV | Man page Source code |
| deswish | Man page Source code |
| estimatePi0 | Source code |
| fishpond-package | Man page |
| getDeltaLFC | Source code |
| getInfReps | Source code |
| getInterxPairStat | Source code |
| getLog2FC | Source code |
| getLog2FCPair | Source code |
| getPairPerms | Source code |
| getPerms | Source code |
| getPseudoPair | Source code |
| getSamStat | Source code |
| getSignedRank | Source code |
| getSparseMatrix | Source code |
| infRepError | Source code |
| isoformProportions | Man page Source code |
| labelKeep | Man page Source code |
| makeInfReps | Man page Source code |
| makeIsoProp | Source code |
| makeLocFDR | Source code |
| makeQvalue | Source code |
| makeSamrObj | Source code |
| makeSimSwishData | Man page Source code |
| miniSwish | Man page Source code |
| permsNote | Source code |
| plotInfReps | Man page Source code |
| plotMASwish | Man page Source code |
| postprocess | Source code |
| randomSamplesToRemove | Source code |
| readEDS | Man page Source code |
| scaleInfReps | Man page Source code |
| splitSwish | Man page Source code |
| swish | Man page Source code |
| swishInterx | Source code |
| swishInterxPair | Source code |
| swishPair | Source code |
| swishStrat | Source code |
| swishTwoGroup | Source code |
