Fishpond: differential transcript and gene expression with inferential replicates

Global functions | |
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addStatsFromCSV | Man page Source code |

boxplot2 | Source code |

computeInfRV | Man page Source code |

deswish | Man page Source code |

estimatePi0 | Source code |

fishpond-package | Man page |

getDeltaLFC | Source code |

getInfReps | Source code |

getInterxPairStat | Source code |

getLog2FC | Source code |

getLog2FCPair | Source code |

getPairPerms | Source code |

getPerms | Source code |

getPseudoPair | Source code |

getSamStat | Source code |

getSignedRank | Source code |

getSparseMatrix | Source code |

infRepError | Source code |

isoformProportions | Man page Source code |

labelKeep | Man page Source code |

makeInfReps | Man page Source code |

makeIsoProp | Source code |

makeLocFDR | Source code |

makeQvalue | Source code |

makeSamrObj | Source code |

makeSimSwishData | Man page Source code |

miniSwish | Man page Source code |

permsNote | Source code |

plotInfReps | Man page Source code |

plotMASwish | Man page Source code |

postprocess | Source code |

randomSamplesToRemove | Source code |

readEDS | Man page Source code |

scaleInfReps | Man page Source code |

splitSwish | Man page Source code |

swish | Man page Source code |

swishInterx | Source code |

swishInterxPair | Source code |

swishPair | Source code |

swishStrat | Source code |

swishTwoGroup | Source code |

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