plotMASwish: MA plot

In fishpond: Fishpond: differential transcript and gene expression with inferential replicates

Description

MA plot

Usage

plotMASwish(y, alpha = 0.05, sigcolor = "blue", ...)

Arguments

y	a SummarizedExperiment (see swish)
alpha	the FDR threshold for coloring points
sigcolor	the color for the significant points
...	passed to plot

Value

nothing, a plot is displayed

Examples

y <- makeSimSwishData()
y <- scaleInfReps(y)
y <- labelKeep(y)
y <- swish(y, x="condition")
plotMASwish(y)

fishpond documentation built on Nov. 8, 2020, 7:54 p.m.