|addStatsFromCSV||Read statistics and nulls from CSV file|
|computeInfRV||Compute inferential relative variance (InfRV)|
|deswish||deswish: DESeq2-apeglm With Inferential Samples Helps|
|fishpond-package||Downstream methods for Salmon and Alevin expression data|
|isoformProportions||Create isoform proportions from scaled data|
|labelKeep||Label rows to keep based on minimal count|
|makeInfReps||Make pseudo-inferential replicates from mean and variance|
|makeSimSwishData||Make simulated data for swish for examples/testing|
|miniSwish||Helper function for distributing Swish on a subset of data|
|plotInfReps||Plot inferential replicates for a gene or transcript|
|readEDS||readEDS - a utility function for quickly reading in Alevin's...|
|scaleInfReps||Scale inferential replicate counts|
|splitSwish||Function for splitting SummarizedExperiment into separate RDS...|
|swish||swish: SAMseq With Inferential Samples Helps|
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