mikelove/fishpond: Fishpond: downstream methods and tools for expression data

Fishpond contains methods for differential transcript and gene expression analysis of RNA-seq data using inferential replicates for uncertainty of abundance quantification, as generated by Gibbs sampling or bootstrap sampling. Also the package contains a number of utilities for working with Salmon and Alevin quantification files.

Getting started

Package details

Bioconductor views AlternativeSplicing BatchEffect DifferentialExpression DifferentialSplicing GeneExpression MultipleComparison Normalization RNASeq Regression Sequencing SingleCell Transcription Visualization
MaintainerMichael Love <michaelisaiahlove@gmail.com>
URL https://thelovelab.github.io/fishpond https://thelovelab.com/mikelove/fishpond
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
mikelove/fishpond documentation built on Aug. 29, 2023, 2:45 p.m.