plotMASwish: MA plot - log fold change over average counts

In mikelove/fishpond: Fishpond: downstream methods and tools for expression data

MA plot - log fold change over average counts

Description

MA plot - log fold change over average counts

Usage

plotMASwish(y, alpha = 0.05, sigcolor = "blue", ...)

Arguments

y	a SummarizedExperiment (see swish)
alpha	the FDR threshold for coloring points
sigcolor	the color for the significant points
...	passed to plot

Value

nothing, a plot is displayed

Examples

y <- makeSimSwishData()
y <- scaleInfReps(y)
y <- labelKeep(y)
y <- swish(y, x="condition")
plotMASwish(y)

mikelove/fishpond documentation built on Jan. 4, 2025, 1:14 p.m.