addStatsFromCSV: Read statistics and nulls from CSV file
In mikelove/fishpond: Fishpond: downstream methods and tools for expression data
View source: R/helper-compress.R
addStatsFromCSV R Documentation
Read statistics and nulls from CSV file
Description
After running splitSwish and the associated
Snakefile, this function can be used to gather and
add the results to the original object. See the alevin
section of the vignette for an example.
Usage
addStatsFromCSV(y = NULL, infile, estPi0 = FALSE)
Arguments
y
a SummarizedExperiment (if NULL, function will
output a data.frame)
infile
character, path to the summary.csv file
estPi0
logical, see swish
Value
the SummarizedExperiment with metadata columns added,
or if y is NULL, a data.frame of compiled results
mikelove/fishpond documentation built on Aug. 29, 2023, 2:45 p.m.
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View source: R/helper-compress.R
| addStatsFromCSV | R Documentation |
Read statistics and nulls from CSV file
Description
After running splitSwish and the associated
Snakefile, this function can be used to gather and
add the results to the original object. See the alevin
section of the vignette for an example.
Usage
addStatsFromCSV(y = NULL, infile, estPi0 = FALSE)
Arguments
y |
a SummarizedExperiment (if NULL, function will output a data.frame) |
infile |
character, path to the |
estPi0 |
logical, see |
Value
the SummarizedExperiment with metadata columns added,
or if y is NULL, a data.frame of compiled results
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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