gcapc: GC Aware Peak Caller

Peak calling for ChIP-seq data with consideration of potential GC bias in sequencing reads. GC bias is first estimated with generalized linear mixture models using effective GC strategy, then applied into peak significance estimation.

Package details

AuthorMingxiang Teng and Rafael A. Irizarry
Bioconductor views BatchEffect ChIPSeq PeakDetection Sequencing
MaintainerMingxiang Teng <tengmx@gmail.com>
URL https://github.com/tengmx/gcapc
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:
if (!requireNamespace("BiocManager", quietly = TRUE))


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gcapc documentation built on Nov. 8, 2020, 8:14 p.m.