GabrielHoffman/zenith: Gene set analysis following differential expression using linear (mixed) modeling with dream

Zenith performs gene set analysis on the result of differential expression using linear (mixed) modeling with dream by considering the correlation between gene expression traits. This package implements the camera method from the limma package proposed by Wu and Smyth (2012). Zenith is a simple extension of camera to be compatible with linear mixed models implemented in variancePartition::dream().

Getting started

Package details

Bioconductor views BatchEffect DifferentialExpression Epigenetics FunctionalGenomics GeneExpression GeneSetEnrichment ImmunoOncology Microarray Normalization Preprocessing QualityControl RNASeq Regression Software Transcriptomics
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
GabrielHoffman/zenith documentation built on Aug. 25, 2023, 6:53 a.m.