IsoformSwitchAnalyzeR: Identify, Annotate and Visualize Alternative Splicing and Isoform Switches with Functional Consequences from both short- and long-read RNA-seq data.

IsoformSwitchAnalyzeR enables identification and analysis of alternative splicing and isoform switches with predicted functional consequences (e.g. gain/loss of protein domains etc.) from quantification of all types of RNASeq by tools such as Kallisto, Salmon, Cufflinks/Cuffdiff, RSEM etc.

Getting started

Package details

AuthorKristoffer Vitting-Seerup
Bioconductor views AlternativeSplicing Annotation BatchEffect BiomedicalInformatics DataImport DifferentialExpression DifferentialSplicing FunctionalGenomics FunctionalPrediction GeneExpression GenePrediction ImmunoOncology MultipleComparison RNASeq StatisticalMethod SystemsBiology Transcription TranscriptomeVariant Transcriptomics Visualization
MaintainerKristoffer Vitting-Seerup <>
LicenseGPL (>= 2)
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:
if (!requireNamespace("BiocManager", quietly = TRUE))


Try the IsoformSwitchAnalyzeR package in your browser

Any scripts or data that you put into this service are public.

IsoformSwitchAnalyzeR documentation built on Nov. 8, 2020, 5:36 p.m.