IsoformSwitchAnalyzeR: An R package to Identify, Annotate and Visualize Isoform Switches with Functional Consequences (from RNA-seq data)
Version 1.2.0

IsoformSwitchAnalyzeR enables identification and analysis of isoform switches with predicted functional consequences (such as gain/loss of protein domains etc) from quantification by Kallisto, Salmon, Cufflinks/Cuffdiff, RSEM etc.

Getting started

Package details

AuthorKristoffer Vitting-Seerup
Bioconductor views AlternativeSplicing Annotation BiomedicalInformatics DataImport DifferentialExpression DifferentialSplicing FunctionalGenomics FunctionalPrediction GeneExpression GenePrediction MultipleComparison RNASeq Sequencing StatisticalMethod SystemsBiology Transcription TranscriptomeVariant Transcriptomics Visualization
MaintainerKristoffer Vitting-Seerup <[email protected]>
LicenseGPL (>= 2)
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:

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IsoformSwitchAnalyzeR documentation built on May 2, 2018, 6:05 p.m.