Files in IsoformSwitchAnalyzeR
An R package to Identify, Annotate and Visualize Isoform Switches with Functional Consequences (from RNA-seq data)

DESCRIPTION
README.md
NAMESPACE
inst/NEWS
inst/CITATION
inst/doc/IsoformSwitchAnalyzeR.Rmd inst/doc/IsoformSwitchAnalyzeR.R
inst/doc/IsoformSwitchAnalyzeR.html
inst/extdata/signalP_results.txt
inst/extdata/cpat_results.txt
inst/extdata/pfam_results.txt
vignettes/Overview_figure_detailed.jpg
vignettes/IsoformSwitchAnalyzeR.Rmd
vignettes/Overview_figure_simple.jpg
vignettes/statistics_illustration.jpg
R/analyze_external_sequence_analysis.R R/tools.R R/isoform_plots.R R/import_data.R R/analyze_switch_consequences.R R/analyze_ORF.R R/test_isoform_switches.R R/plot_all_iso_switch.R R/high_level_functions.R R/analyze_alternative_splicing.R R/methods.R R/classes.R
src/utils.c
man/analyzeAlternativSplicing.Rd man/isoformSwitchTest.Rd man/analyzeORF.Rd man/extractSplicingSummary.Rd man/extractCallibarionStatus.Rd man/importCufflinksData.Rd man/testData.Rd man/isoformSwitchAnalysisCombined.Rd man/analyzePFAM.Rd man/extractExpressionMatrix.Rd man/prepareCuffExample.Rd man/extractTopSwitches.Rd man/subsetSwitchAnalyzeRlist.Rd man/extractSequence.Rd man/extractGenomeWideSplicingAnalysis.Rd man/importCufflinksGalaxyData.Rd man/analyzeCPAT.Rd man/analyzeSwitchConsequences.Rd man/expressionAnalysisPlots.Rd man/IsoformSwitchTestDRIMSeq.Rd man/extractSplicingEnrichmentComparison.Rd man/isoformToGeneExp.Rd man/extractConsequenceEnrichment.Rd man/getCDS.Rd man/extractSwitchOverlap.Rd man/extractSplicingEnrichment.Rd man/importIsoformExpression.Rd man/analyzeSignalP.Rd man/extractConsequenceSummary.Rd man/switchAnalyzeRlist.Rd man/extractSwitchSummary.Rd man/extractGenomeWideAnalysis.Rd man/isoformSwitchAnalysisPart1.Rd man/isoformSwitchAnalysisPart2.Rd man/importRdata.Rd man/extractConsequenceEnrichmentComparison.Rd man/CDSSet.Rd man/preFilter.Rd man/switchPlot.Rd man/switchPlotTranscript.Rd man/importGTF.Rd man/switchPlotTopSwitches.Rd
build/vignette.rds
data/exampleSwitchListIntermediary.RData
data/exampleSwitchList.RData
data/exampleSwitchListAnalyzed.RData
IsoformSwitchAnalyzeR documentation built on May 2, 2018, 6:05 p.m.