Biocview "FunctionalPrediction"

Basic peak calling on STARR-seq data
Candidate Gene Miner
circRNAprofiler: An R-Based Computational Framework for the Downstream Analysis of Circular RNAs
circRNAprofiler: An R-Based Computational Framework for the Downstream Analysis of Circular RNAs
Clustering of Genomic Regions Analysis Method
Clustering of Genomic Regions Analysis Method
Comprehensive Annotation of Predictive Features for Interval-based Genomic Data
Delineate outstanding genomic zones of differential gene activity
Delineate outstanding genomic zones of differential gene activity
Extending guilt by association by degree
Extending guilt by association by degree
Fast calculation of uniConSig and CSEA
Fast calculation of uniConSig and CSEA
Find Potential Disease-Related Genes
flexible pipelines for secretome prediction
Functional analysis of metabolic and transcriptomic data
Functional analysis of metabolic and transcriptomic data
Functional Annotation of Custom Transcriptomes
Functions for the projection of weights from PCA, CoGAPS, NMF, correlation, and clustering
Functions for the projection of weights from PCA, CoGAPS, NMF, correlation, and clustering
Functions for the projection of weights from PCA, CoGAPS, NMF, correlation, and clustering
Functions for the projection of weights from PCA, CoGAPS, NMF, correlation, and clustering
Gene regulator enrichment analysis
Gene regulator enrichment analysis
GWAS Analysis of Regulatory or Functional Information Enrichment with LD correction
Hi-C Annotation and Graphics Ensemble
Identify, Annotate and Visualize Alternative Splicing and Isoform Switches with Functional Consequences from both short- and long-read RNA-seq data.
Identify, Annotate and Visualize Alternative Splicing and Isoform Switches with Functional Consequences from both short- and long-read RNA-seq data.
Inference of Genetic Variants Driving Cellular Phenotypes
Mean Alterations Using Discrete Expression
Package to Draw Protein Schematics from Uniprot API output
Package to Draw Protein Schematics from Uniprot API output
Pathway RespOnsive GENes for activity inference from gene expression
Pathway RespOnsive GENes for activity inference from gene expression
Phenotype Consensus ANalysis (PCAN)
PhyloProfile
PhyloProfile
PhyloProfile
PhyloProfileCorona
R Interface with InterMine-Powered Databases
R Interface with InterMine-Powered Databases
R Interface with InterMine-Powered Databases
R Interface with InterMine-Powered Databases
RNASeqR: an R package for automated two-group RNA-Seq analysis workflow
RNASeqR: an R package for automated two-group RNA-Seq analysis workflow
RNASeqR: an R package for automated two-group RNA-Seq analysis workflow
R package for RIVER (RNA-Informed Variant Effect on Regulation)
R package for RIVER (RNA-Informed Variant Effect on Regulation)
R package for RIVER (RNA-Informed Variant Effect on Regulation)
R wrapper for the OMA REST API
R wrapper for the OMA REST API
R wrapper for the OMA REST API
R wrapper for the OMA REST API
Smooth modeling of bisulfite sequencing
Tools for spliced gene structure manipulation and analysis
Tools for spliced gene structure manipulation and analysis
Virtual Inference of Protein-activity by Enriched Regulon analysis
Virtual Inference of Protein-activity by Enriched Regulon analysis