HetzDra/turboGliph: Find Specificity Groups with GLIPH and GLIPH2 Method

GLIPH is an algorithm to cluster TCRs that are predicted to bind the same MHC-restricted peptide antigen. With this package we provide a runtime efficient implementation of the GLIPH algorithm. The package is rounded off by the inclusion of the second version of GLIPH, GLIPH2, as well as the provision of an extensive customizable visualization function of the clustering result using visNetwork.

Getting started

Package details

Bioconductor views Clustering FunctionalGenomics FunctionalPrediction GeneticVariability ImmunoOncology MotifDiscovery
Maintainer
LicenseGPL-3
Version0.99.2
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("remotes")
remotes::install_github("HetzDra/turboGliph")
HetzDra/turboGliph documentation built on Oct. 2, 2022, 2:22 a.m.