Man pages for HetzDra/turboGliph
Find Specificity Groups with GLIPH and GLIPH2 Method
| BlosumVec | Amino acid pairs with non-negative BLOSUM62 score |
| cluster_scoring | Scoring cdr3 clusters as performed in GLIPH and GLIPH2... |
| de_novo_TCRs | De novo generation of cdr3 sequences based on GLIPH or GLIPH2 |
| find_motifs | Finding motifs in sequences |
| getRandomSubsample | Generating a random subsample |
| gliph2 | Grouping of Lymphocyte Interactions by Paratope Hotspots... |
| gliph_combined | Grouping of Lymphocyte Interactions by Paratope Hotspots... |
| gliph_input_data | GLIPH input data |
| gTRB | Germline TCR-beta CDR3 fragments |
| load_gliph_output | Loading turboGLIPH and GLIPH2 output |
| plot_network | Plotting network calculated by turboGliph or GLIPH2 |
| ref_cluster_sizes | Cluster size probabilities in naive reference repertoire |
| reference_list | Naive reference repertoires |
| turbo_gliph | Grouping of Lymphocyte Interactions by Paratope Hotspots |
| turboGliph | turboGliph: Grouping of Lymphocyte Interactions by Paratope... |
