Biocview "MotifDiscovery"

A package for discriminative motif discovery, designed for high throughput sequencing dataset

de novo motif discovery

Discern RNA structure proximal to protein binding

Find Specificity Groups with GLIPH and GLIPH2 Method

Functionality Visualization for Motifs

Functions for analyzing SELEX-seq data

Identification of potential quadruplex forming sequences

Identify Different Architectures of Sequence Elements

Import, Modify, and Export Motifs with R

Motif Analysis In Gene Regulatory Networks

motif matching, comparison, and de novo discovery using the MEME Suite

Predicting binding site consensus from ranked DNA sequences

RNA Centric Annotation System

Set of tools to identify periodic occurrences of k-mers in DNA sequences

Software Package for Transcription Factor Binding Site (TFBS) Analysis

Suffix Array Kernel Smoothing for discovery of correlative sequence motifs and multi-motif domains