BCRANK: Predicting binding site consensus from ranked DNA sequences

Functions and classes for de novo prediction of transcription factor binding consensus by heuristic search

AuthorAdam Ameur <Adam.Ameur@genpat.uu.se>
Date of publicationNone
MaintainerAdam Ameur <Adam.Ameur@genpat.uu.se>
LicenseGPL-2
Version1.36.0

View on Bioconductor

Functions

bcrank Man page
BCRANKmatch Man page
BCRANKmatch-class Man page
BCRANKout Man page
BCRANKresult Man page
BCRANKresult-class Man page
bcrankScore Man page
bcrankScore,BCRANKmatch-method Man page
BCRANKsearch Man page
BCRANKsearch-class Man page
consensus Man page
consensus,BCRANKmatch-method Man page
fname Man page
fname,BCRANKresult-method Man page
matchingSites Man page
matchVector Man page
matchVector,BCRANKmatch-method Man page
plot,BCRANKsearch,missing-method Man page
pwm Man page
pwm,BCRANKsearch-method Man page
searchPath Man page
searchPath,BCRANKsearch-method Man page
show,BCRANKmatch-method Man page
show,BCRANKresult-method Man page
show,BCRANKsearch-method Man page
toptable Man page
toptable,BCRANKresult-method Man page

Files

BCRANK/DESCRIPTION
BCRANK/NAMESPACE
BCRANK/R
BCRANK/R/AllClasses.R BCRANK/R/AllGenerics.R BCRANK/R/BCRANK.R BCRANK/R/methods-BCRANKmatch.R BCRANK/R/methods-BCRANKresult.R BCRANK/R/methods-BCRANKsearch.R
BCRANK/build
BCRANK/build/vignette.rds
BCRANK/data
BCRANK/data/BCRANKout.rda
BCRANK/inst
BCRANK/inst/Exfiles
BCRANK/inst/Exfiles/USF1_small.fa
BCRANK/inst/doc
BCRANK/inst/doc/BCRANK.R
BCRANK/inst/doc/BCRANK.Rnw
BCRANK/inst/doc/BCRANK.pdf
BCRANK/man
BCRANK/man/BCRANK-internal.Rd BCRANK/man/BCRANKmatch-class.Rd BCRANK/man/BCRANKout.Rd BCRANK/man/BCRANKresult-class.Rd BCRANK/man/BCRANKsearch-class.Rd BCRANK/man/bcrank.Rd BCRANK/man/matchingSites.Rd
BCRANK/src
BCRANK/src/init.c
BCRANK/src/match_consensus.c
BCRANK/src/match_consensus.h
BCRANK/vignettes
BCRANK/vignettes/BCRANK.Rnw
BCRANK/vignettes/BCRANK_intro_fig1.pdf
BCRANK/vignettes/BCRANK_intro_fig2.pdf

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

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