BCRANKresult-class: Class "BCRANKresult"

In BCRANK: Predicting binding site consensus from ranked DNA sequences

Description

Holds the results from running bcrank. Contains a number of BCRANKsearch-class object, one for each restart of the bcrank search.

Slots

fname:

the name of the fasta file used for running bcrank.

toplist:

a list of BCRANKsearch-class objects, ranked by their scores.

funCall:

the function call that was made to bcrank.

nrSeqs:

number of sequences in the fasta input file.

restarts:

number of restarts used in the bcrank search.

Methods

fname

signature(object = "BCRANKmatch"): Returns the fasta file name.

toplist

signature(object = "BCRANKmatch", i=NULL): If i is NULL, returns a data frame containing consensus and score for the results for each restart of the bcrank search. Otherwise, the i'th BCRANKsearch-class object in the toplist is returned.

Author(s)

Adam Ameur, [e-mail]

See Also

bcrank, BCRANKsearch-class,

BCRANK documentation built on Nov. 8, 2020, 8:21 p.m.