universalmotif: Import, Modify, and Export Motifs with R

Allows for importing most common motif types into R for use by functions provided by other Bioconductor motif-related packages. Motifs can be exported into most major motif formats from various classes as defined by other Bioconductor packages. A suite of motif and sequence manipulation and analysis functions are included, including enrichment, comparison, P-value calculation, shuffling, trimming, higher-order motifs, and others.

Package details

AuthorBenjamin Jean-Marie Tremblay [aut, cre] (<https://orcid.org/0000-0002-7441-2951>), Spencer Nystrom [ctb]
Bioconductor views DataImport GeneRegulation MotifAnnotation MotifDiscovery
MaintainerBenjamin Jean-Marie Tremblay <b2tremblay@uwaterloo.ca>
LicenseGPL-3
Version1.6.3
URL https://github.com/bjmt/universalmotif
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("universalmotif")

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universalmotif documentation built on May 9, 2020, 2 a.m.