read_jaspar: Import JASPAR motifs.
In universalmotif: Import, Modify, and Export Motifs with R
Description
Usage
Arguments
Value
Author(s)
References
See Also
Examples
Description
Import JASPAR formatted motifs. See http://jaspar.genereg.net/.
Can be either DNA, RNA, or AA motifs.
Usage
1
read_jaspar(file, skip = 0)
Arguments
file
character(1) File name.
skip
numeric(1) If not zero, will skip however many desired lines in the
file before starting to read.
Value
list universalmotif objects.
Author(s)
Benjamin Jean-Marie Tremblay, b2tremblay@uwaterloo.ca
References
\insertRefjasparuniversalmotif
See Also
Other read_motifs:
read_cisbp(),
read_homer(),
read_matrix(),
read_meme(),
read_motifs(),
read_transfac(),
read_uniprobe()
Examples
1
2
jaspar <- read_jaspar(system.file("extdata", "jaspar.txt",
package = "universalmotif"))
universalmotif documentation built on April 8, 2021, 6 p.m.
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Description Usage Arguments Value Author(s) References See Also Examples
Description
Import JASPAR formatted motifs. See http://jaspar.genereg.net/. Can be either DNA, RNA, or AA motifs.
Usage
1 | read_jaspar(file, skip = 0)
|
Arguments
file |
|
skip |
|
Value
list universalmotif objects.
Author(s)
Benjamin Jean-Marie Tremblay, b2tremblay@uwaterloo.ca
References
\insertRefjasparuniversalmotif
See Also
Other read_motifs:
read_cisbp(),
read_homer(),
read_matrix(),
read_meme(),
read_motifs(),
read_transfac(),
read_uniprobe()
Examples
1 2 | jaspar <- read_jaspar(system.file("extdata", "jaspar.txt",
package = "universalmotif"))
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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