shuffle_motifs: Shuffle motifs by column.

In universalmotif: Import, Modify, and Export Motifs with R

Description

Given a set of motifs, shuffle the columns between them. Currently does not support keeping the 'multifreq' slot. Only the 'bkg', 'nsites', 'strand', and 'bkgsites' slots will be preserved. Uses the same shuffling methods as shuffle_sequences(). When shuffling more than one motif, they are shuffled together.

Usage

shuffle_motifs(motifs, k = 2, method = "linear")

Arguments

motifs	See convert_motifs() for acceptable formats.
k	numeric(1) K-let size.
method	character(1) Currently only 'linear' is accepted.

Value

Motifs. See convert_motifs() for available output formats.

Author(s)

Benjamin Jean-Marie Tremblay, [e-mail]

See Also

shuffle_sequences()

universalmotif documentation built on April 8, 2021, 6 p.m.