read_transfac: Import TRANSFAC motifs.

In universalmotif: Import, Modify, and Export Motifs with R

Description

Import TRANSFAC formatted motifs. Assumed to be DNA motifs, type PCM. See system.file("extdata", "transfac.txt", pacakge="universalmotif") for an example motif.

Usage

read_transfac(file, skip = 0)

Arguments

file	character(1) File name.
skip	numeric(1) If not zero, will skip however many desired lines in the file before starting to read.

Value

list universalmotif objects.

Author(s)

Benjamin Jean-Marie Tremblay, [e-mail]

References

\insertRef

transfacuniversalmotif

See Also

Other read_motifs: read_cisbp(), read_homer(), read_jaspar(), read_matrix(), read_meme(), read_motifs(), read_uniprobe()

Examples

transfac <- read_transfac(system.file("extdata", "transfac.txt",
                                      package = "universalmotif"))

universalmotif documentation built on April 8, 2021, 6 p.m.