Import MEME formatted motifs, as well as original motif sequences. See
http://meme-suite.org/doc/meme-format.html. Both 'full' and 'minimal'
formats are supported. DREME and STREME motifs can also be imported, but note
readsites.meta arguments do nothing.
Please note that the typical number precision limit in R is around 1e-308.
This means that motif P-values in MEME files below this limit are rounded
automatically to 0. To get around this, the E-value is also stored as a
string in the
extrainfo slot. If you require a numeric value for analysis,
log_string_pval() function to get the log of the string-formatted
list universalmotif objects. If
readsites = TRUE, a list
comprising of a sub-list of motif objects and a sub-list of
motif sites will be returned. If
readsites.meta = TRUE, then two
additional list items will be present, one containing site positions
and P-values, and another containing combined sequence p-values.
Benjamin Jean-Marie Tremblay, email@example.com
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