Biocview "MotifAnnotation"

Affinity test for identifying regularity Indels

Affinity test for identifying regulatory SNPs

An Annotated Collection of Protein-DNA Binding Sequence Motifs

A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites

A seqLogo Alternative

Binned Motif Enrichment Analysis and Visualization

coMET: visualisation of regional epigenome-wide association scan (EWAS) results and DNA co-methylation patterns

Data package for JASPAR 2016

DiffLogo: A comparative visualisation of biooligomer motifs

Fast Motif Matching in R

Functionality Visualization for Motifs

Functions for analyzing SELEX-seq data

Import, Modify, and Export Motifs with R

Inferring Regulatory Element Landscapes and Transcription Factor Networks Using Cancer Methylomes

Learning from DNA to Predict Enhancers

Motif Identification and Validation

motif matching, comparison, and de novo discovery using the MEME Suite

Obtain total affinity and occupancies for binding site matrices on a given sequence

Plot stacked logos for single or multiple DNA, RNA and amino acid sequence

Prediction of intronic splicing branchpoints

PWM enrichment analysis

RcisTarget: Identify transcription factor binding motifs enriched on a gene list

RcisTarget Identify transcription factor binding motifs enriched on a list of genes or genomic regions

RNA Centric Annotation System

R package for analysing TFBSs in DNA sequences

Set of tools to identify periodic occurrences of k-mers in DNA sequences

Software Package for Transcription Factor Binding Site (TFBS) Analysis

TFregulomeR reveals transcription factors’ context-specific features and functions

Transcription Factors Enrichment Analysis