leipzig/berrylogo: A seqLogo Alternative

A berryLogo is a seqLogo alternative developed by Charles C. Berry for "Selection of Target Sites for Mobile DNA Integration in the Human Genome" <http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1664696>. Instead of "information content", the y-axis is the log relative frequency with respect to the background frequency, generated here from the gc_content parameter.

Getting started

Package details

AuthorJeremy Leipzig <[email protected]>
Bioconductor views MotifAnnotation
MaintainerJeremy Leipzig <[email protected]>
LicenseGPL-2 | file LICENSE
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
leipzig/berrylogo documentation built on Feb. 17, 2018, 8:44 p.m.