MatrixRider: Obtain total affinity and occupancies for binding site matrices on a given sequence
Version 1.8.0

Calculates a single number for a whole sequence that reflects the propensity of a DNA binding protein to interact with it. The DNA binding protein has to be described with a PFM matrix, for example gotten from Jaspar.

Package details

AuthorElena Grassi
Bioconductor views GeneRegulation Genetics MotifAnnotation
MaintainerElena Grassi <grassi.e@gmail.com>
LicenseGPL-3
Version1.8.0
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("MatrixRider")

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MatrixRider documentation built on May 31, 2017, 11:08 a.m.