MatrixRider: Obtain total affinity and occupancies for binding site matrices on a given sequence

Calculates a single number for a whole sequence that reflects the propensity of a DNA binding protein to interact with it. The DNA binding protein has to be described with a PFM matrix, for example gotten from Jaspar.

Package details

AuthorElena Grassi
Bioconductor views GeneRegulation Genetics MotifAnnotation
MaintainerElena Grassi <>
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:
if (!requireNamespace("BiocManager", quietly = TRUE))


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MatrixRider documentation built on Nov. 8, 2020, 8:25 p.m.