js2264/periodicDNA: Set of tools to identify periodic occurrences of k-mers in DNA sequences

This R package helps the user identify k-mers (e.g. di- or tri-nucleotides) present periodically in a set of genomic loci (typically regulatory elements). The functions of this package provide a straightforward approach to find periodic occurrences of k-mers in DNA sequences, such as regulatory elements. It is not aimed at identifying motifs separated by a conserved distance; for this type of analysis, please visit MEME website.

Getting started

Package details

Bioconductor views Alignment Coverage DataImport MotifAnnotation MotifDiscovery SequenceMatching Sequencing
LicenseGPL-3 + file LICENSE
URL https://github.com/js2264/periodicDNA
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
js2264/periodicDNA documentation built on Nov. 3, 2022, 10:47 p.m.