This R package helps the user identify k-mers (e.g. di- or tri-nucleotides) present periodically in a set of genomic loci (typically regulatory elements). The functions of this package provide a straightforward approach to find periodic occurrences of k-mers in DNA sequences, such as regulatory elements. It is not aimed at identifying motifs separated by a conserved distance; for this type of analysis, please visit MEME website.
|Bioconductor views||Alignment Coverage DataImport MotifAnnotation MotifDiscovery SequenceMatching Sequencing|
|License||GPL-3 + file LICENSE|
|Package repository||View on GitHub|
Install the latest version of this package by entering the following in R:
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