API for js2264/periodicDNA
Set of tools to identify periodic occurrences of k-mers in DNA sequences

Global functions
DNAStringSet2GRanges Source code
alignToTSS Source code
binWrapper Source code
ce11_ATACseq Man page
ce11_TSSs Man page
ce11_WW_10bp Man page
ce11_all_REs Man page
ce11_proms Man page
ce11_proms_seqs Man page
checkPeriodFromFourier Source code
chunkWrapper Source code
cleanUpDirectory Source code
deconvolveBidirectionalPromoters Source code
getChunks Source code
getCovMatrix Source code
getPeriodicity Man page Source code
getPeriodicity.DNAString Man page Source code
getPeriodicity.DNAStringSet Man page Source code
getPeriodicity.GRanges Man page Source code
getPeriodicityTrack Man page Source code
getPeriodicityWithIterations Man page Source code
getPeriodicityWithIterations.DNAStringSet Man page Source code
getPeriodicityWithIterations.GRanges Man page Source code
getPeriodsMetrics Source code
na.remove Source code
na.replace Source code
namedListToLongFormat Source code
normalizeHistogram Source code
partitionGenome Source code
plotAggregateCoverage Man page Source code
plotAggregateCoverage.CompressedRleList Man page Source code
plotAggregateCoverage.SimpleRleList Man page Source code
plotAggregateCoverage.list Man page Source code
plotPeriodicityResults Man page Source code
plotWithIterations Source code
scaleBigWigs Source code
setUpBPPARAM Man page Source code
shuffleSeq Source code
smoothBigWig Source code
theme_ggplot2 Man page Source code
withSeq Source code
js2264/periodicDNA documentation built on April 22, 2021, 10:43 p.m.