Files in js2264/periodicDNA

Set of tools to identify periodic occurrences of k-mers in DNA sequences

.Rbuildignore

.github/.gitignore

.github/workflows/R-CMD-check.yaml

.github/workflows/pkgdown.yaml

.github/workflows/pr-commands.yaml

.github/workflows/test-coverage.yaml

.gitignore

DESCRIPTION

LICENSE

NAMESPACE

NEWS.md R/GRanges.R R/bigwigs.R R/data.R R/globals.R R/iterations.R R/periodicity.R R/plot.R R/track.R R/utils.R README.md

codecov.yml

data/ce11_ATACseq.rda

data/ce11_TSSs.rda

data/ce11_WW_10bp.rda

data/ce11_all_REs.rda

data/ce11_proms.rda

data/ce11_proms_seqs.rda

man/ce11_ATACseq.Rd man/ce11_TSSs.Rd man/ce11_WW_10bp.Rd man/ce11_all_REs.Rd man/ce11_proms.Rd man/ce11_proms_seqs.Rd

man/figures/TT-10bp-periodicity_tissue-spe-TSSs.png

man/figures/TT_tissue-specific-classes.png

man/figures/WW-TT-AA-10bp-periodicity_tissue-spe-TSSs.png

man/figures/WW_tissue-specific-classes.png

man/figures/logo.png

man/figures/periodicityDNA_principle.png

man/figures/ubiquitous-promoters_TT-periodicity.png

man/getPeriodicity.Rd man/getPeriodicityTrack.Rd man/getPeriodicityWithIterations.Rd man/plotAggregateCoverage.Rd man/plotPeriodicityResults.Rd man/setUpBPPARAM.Rd man/theme_ggplot2.Rd

pkgdown/_pkgdown.yml

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pkgdown/favicon/favicon.ico

tests/testthat.R tests/testthat/test-generateperiodicitytrack.R tests/testthat/test-getPeriodicity.R tests/testthat/test-utils.R tests/testthat/test-withIterations.R vignettes/periodicDNA.Rmd

js2264/periodicDNA documentation built on Nov. 3, 2022, 10:47 p.m.