Files in js2264/periodicDNA
Set of tools to identify periodic occurrences of k-mers in DNA sequences

.Rbuildignore
.github/.gitignore
.github/workflows/R-CMD-check.yaml
.github/workflows/pkgdown.yaml
.github/workflows/pr-commands.yaml
.github/workflows/test-coverage.yaml
.gitignore
DESCRIPTION
LICENSE
NAMESPACE
NEWS.md R/GRanges.R R/bigwigs.R R/data.R R/globals.R R/iterations.R R/periodicity.R R/plot.R R/track.R R/utils.R README.md
codecov.yml
data/ce11_ATACseq.rda
data/ce11_TSSs.rda
data/ce11_WW_10bp.rda
data/ce11_all_REs.rda
data/ce11_proms.rda
data/ce11_proms_seqs.rda
man/ce11_ATACseq.Rd man/ce11_TSSs.Rd man/ce11_WW_10bp.Rd man/ce11_all_REs.Rd man/ce11_proms.Rd man/ce11_proms_seqs.Rd
man/figures/TT-10bp-periodicity_tissue-spe-TSSs.png
man/figures/TT_tissue-specific-classes.png
man/figures/WW-TT-AA-10bp-periodicity_tissue-spe-TSSs.png
man/figures/WW_tissue-specific-classes.png
man/figures/logo.png
man/figures/periodicityDNA_principle.png
man/figures/ubiquitous-promoters_TT-periodicity.png
man/getPeriodicity.Rd man/getPeriodicityTrack.Rd man/getPeriodicityWithIterations.Rd man/plotAggregateCoverage.Rd man/plotPeriodicityResults.Rd man/setUpBPPARAM.Rd man/theme_ggplot2.Rd
pkgdown/_pkgdown.yml
pkgdown/favicon/apple-touch-icon-120x120.png
pkgdown/favicon/apple-touch-icon-152x152.png
pkgdown/favicon/apple-touch-icon-180x180.png
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pkgdown/favicon/favicon-16x16.png
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pkgdown/favicon/favicon.ico
tests/testthat.R tests/testthat/test-generateperiodicitytrack.R tests/testthat/test-getPeriodicity.R tests/testthat/test-utils.R tests/testthat/test-withIterations.R vignettes/periodicDNA.Rmd
js2264/periodicDNA documentation built on April 22, 2021, 10:43 p.m.