Man pages for js2264/periodicDNA
Set of tools to identify periodic occurrences of k-mers in DNA sequences

ce11_all_REsce11_all_REs
ce11_ATACseqce11_ATACseq
ce11_promsce11_proms
ce11_proms_seqsce11_proms_seqs
ce11_TSSsce11_TSSs
ce11_WW_10bpce11_WW_10bp
getPeriodicityA function to compute k-mer periodicity in sequence(s).
getPeriodicityTrackFunction to generate a k-mer periodicity track
getPeriodicityWithIterationsA function to compute PSDs with iterations
plotAggregateCoverageA function to plot aggregated signals over sets of GRanges
plotPeriodicityResultsPlot the output of getPeriodicity()
setUpBPPARAMsetUpBPPARAM
theme_ggplot2Personal ggplot2 theming function, adapted from...
js2264/periodicDNA documentation built on April 22, 2021, 10:43 p.m.