BIMSBbioinfo/RCAS: RNA Centric Annotation System

RCAS is an R/Bioconductor package designed as a generic reporting tool for the functional analysis of transcriptome-wide regions of interest detected by high-throughput experiments. Such transcriptomic regions could be, for instance, signal peaks detected by CLIP-Seq analysis for protein-RNA interaction sites, RNA modification sites (alias the epitranscriptome), CAGE-tag locations, or any other collection of query regions at the level of the transcriptome. RCAS produces in-depth annotation summaries and coverage profiles based on the distribution of the query regions with respect to transcript features (exons, introns, 5'/3' UTR regions, exon-intron boundaries, promoter regions). Moreover, RCAS can carry out functional enrichment analyses and discriminative motif discovery.

Getting started

Package details

Bioconductor views Coverage GO GeneSetEnrichment GeneTarget GenomeAnnotation MotifAnnotation MotifDiscovery Software Transcriptomics
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
BIMSBbioinfo/RCAS documentation built on Nov. 1, 2023, 2:47 a.m.